Hi Gabrielle,
I did a quick check, and I installed SQL Anywhere 16 on to a Windows 7 x86 machine and on to a Windows 7 x64 machine - the diff between the "\MobiLink\Setup\syncase.sql" files doesn't show any differences for myself.
Could you clarify which sections are actually missing? Are you confident that both of these files came from a full SQL Anywhere 16 installation?
Regards,
Jeff Albion
SAP Active Global Support